diff --git a/compose.yml b/compose.yml
index 53625e4ec4e929a872c42bbb5aceb563d36d3d88..25a0bc2a48def4061b81cb827ffe3c19092762dc 100644
--- a/compose.yml
+++ b/compose.yml
@@ -19,7 +19,6 @@ x-api: &api
npm_config_cache: /app/.npm
NEO4J_PORT: 7687
env_file: *authfile
- command: "npm start"
services:
@@ -37,6 +36,7 @@ services:
- "4000:4000"
profiles:
- prod
+ command: "npm start"
api-dev:
<<: *api
@@ -50,9 +50,11 @@ services:
- "4000"
ports:
- "4000:4000"
+ - "9229:9229"
profiles:
- api-standalone
- dev
+ command: "npm run debug"
server-install:
<<: *api
diff --git a/package-lock.json b/package-lock.json
index ab4db0d95cb487bfe6920e9188107dbdead60922..fbf9354a67084ff5f31f34b74c10da4ee766aa93 100644
--- a/package-lock.json
+++ b/package-lock.json
@@ -9,21 +9,21 @@
"version": "1.0.0",
"license": "AGPL-version-3.0",
"dependencies": {
- "@apollo/server": "^4.10.0",
- "@graphql-tools/graphql-file-loader": "^8.0.1",
- "@graphql-tools/load": "^8.0.1",
- "@neo4j/graphql": "^5.4.4",
- "@neo4j/graphql-ogm": "^5.4.4",
- "express": "^4.18.2",
- "graphql": "^16.8.1",
+ "@apollo/server": "^4.11.3",
+ "@graphql-tools/graphql-file-loader": "^8.0.14",
+ "@graphql-tools/load": "^8.0.14",
+ "@neo4j/graphql": "^5.11.5",
+ "@neo4j/graphql-ogm": "^5.11.5",
+ "express": "^4.21.2",
+ "graphql": "^16.10.0",
"graphql-tag": "^2.12.6",
- "neo4j-driver": "^5.21.0",
- "nodemon": "^3.0.3"
+ "neo4j-driver": "^5.28.1",
+ "nodemon": "^3.1.9"
},
"devDependencies": {
- "@graphql-eslint/eslint-plugin": "^3.20.1",
- "@graphql-tools/mock": "^9.0.1",
- "@graphql-tools/schema": "^10.0.2"
+ "@graphql-eslint/eslint-plugin": "^4.3.0",
+ "@graphql-tools/mock": "^9.0.17",
+ "@graphql-tools/schema": "^10.0.18"
},
"engines": {
"node": ">= 14.0.0",
@@ -92,14 +92,15 @@
}
},
"node_modules/@apollo/server": {
- "version": "4.10.4",
- "resolved": "https://registry.npmjs.org/@apollo/server/-/server-4.10.4.tgz",
- "integrity": "sha512-HS12CUa1wq8f5zKXOKJRwRdESFp4por9AINecpcsEUV9jsCP/NqPILgx0hCOOFJuKxmnaL7070xO6l5xmOq4Fw==",
+ "version": "4.11.3",
+ "resolved": "https://registry.npmjs.org/@apollo/server/-/server-4.11.3.tgz",
+ "integrity": "sha512-mW8idE2q0/BN14mimfJU5DAnoPHZRrAWgwsVLBEdACds+mxapIYxIbI6AH4AsOpxfrpvHts3PCYDbopy1XPW1g==",
+ "license": "MIT",
"dependencies": {
"@apollo/cache-control-types": "^1.0.3",
"@apollo/server-gateway-interface": "^1.1.1",
"@apollo/usage-reporting-protobuf": "^4.1.1",
- "@apollo/utils.createhash": "^2.0.0",
+ "@apollo/utils.createhash": "^2.0.2",
"@apollo/utils.fetcher": "^2.0.0",
"@apollo/utils.isnodelike": "^2.0.0",
"@apollo/utils.keyvaluecache": "^2.1.0",
@@ -107,13 +108,12 @@
"@apollo/utils.usagereporting": "^2.1.0",
"@apollo/utils.withrequired": "^2.0.0",
"@graphql-tools/schema": "^9.0.0",
- "@josephg/resolvable": "^1.0.0",
"@types/express": "^4.17.13",
"@types/express-serve-static-core": "^4.17.30",
"@types/node-fetch": "^2.6.1",
"async-retry": "^1.2.1",
"cors": "^2.8.5",
- "express": "^4.17.1",
+ "express": "^4.21.1",
"loglevel": "^1.6.8",
"lru-cache": "^7.10.1",
"negotiator": "^0.6.3",
@@ -193,9 +193,10 @@
}
},
"node_modules/@apollo/utils.createhash": {
- "version": "2.0.1",
- "resolved": "https://registry.npmjs.org/@apollo/utils.createhash/-/utils.createhash-2.0.1.tgz",
- "integrity": "sha512-fQO4/ZOP8LcXWvMNhKiee+2KuKyqIcfHrICA+M4lj/h/Lh1H10ICcUtk6N/chnEo5HXu0yejg64wshdaiFitJg==",
+ "version": "2.0.2",
+ "resolved": "https://registry.npmjs.org/@apollo/utils.createhash/-/utils.createhash-2.0.2.tgz",
+ "integrity": "sha512-UkS3xqnVFLZ3JFpEmU/2cM2iKJotQXMoSTgxXsfQgXLC5gR1WaepoXagmYnPSA7Q/2cmnyTYK5OgAgoC4RULPg==",
+ "license": "MIT",
"dependencies": {
"@apollo/utils.isnodelike": "^2.0.1",
"sha.js": "^2.4.11"
@@ -227,6 +228,7 @@
"version": "2.0.1",
"resolved": "https://registry.npmjs.org/@apollo/utils.isnodelike/-/utils.isnodelike-2.0.1.tgz",
"integrity": "sha512-w41XyepR+jBEuVpoRM715N2ZD0xMD413UiJx8w5xnAZD2ZkSJnMJBoIzauK83kJpSgNuR6ywbV29jG9NmxjK0Q==",
+ "license": "MIT",
"engines": {
"node": ">=14"
}
@@ -355,18 +357,6 @@
"graphql": "*"
}
},
- "node_modules/@ardatan/sync-fetch": {
- "version": "0.0.1",
- "resolved": "https://registry.npmjs.org/@ardatan/sync-fetch/-/sync-fetch-0.0.1.tgz",
- "integrity": "sha512-xhlTqH0m31mnsG0tIP4ETgfSB6gXDaYYsUWTrlUV93fFQPI9dd8hE0Ot6MHLCtqgB32hwJAC3YZMWlXZw7AleA==",
- "dev": true,
- "dependencies": {
- "node-fetch": "^2.6.1"
- },
- "engines": {
- "node": ">=14"
- }
- },
"node_modules/@babel/code-frame": {
"version": "7.24.7",
"resolved": "https://registry.npmjs.org/@babel/code-frame/-/code-frame-7.24.7.tgz",
@@ -574,9 +564,10 @@
}
},
"node_modules/@babel/helper-plugin-utils": {
- "version": "7.24.7",
- "resolved": "https://registry.npmjs.org/@babel/helper-plugin-utils/-/helper-plugin-utils-7.24.7.tgz",
- "integrity": "sha512-Rq76wjt7yz9AAc1KnlRKNAi/dMSVWgDRx43FHoJEbcYU6xOWaE2dVPwcdTukJrjxS65GITyfbvEYHvkirZ6uEg==",
+ "version": "7.26.5",
+ "resolved": "https://registry.npmjs.org/@babel/helper-plugin-utils/-/helper-plugin-utils-7.26.5.tgz",
+ "integrity": "sha512-RS+jZcRdZdRFzMyr+wcsaqOmld1/EqTghfaBGQQd/WnRdzdlvSZ//kF7U8VQTxf1ynZ4cjUcYgjVGx13ewNPMg==",
+ "license": "MIT",
"engines": {
"node": ">=6.9.0"
}
@@ -810,12 +801,13 @@
}
},
"node_modules/@babel/plugin-syntax-import-assertions": {
- "version": "7.24.7",
- "resolved": "https://registry.npmjs.org/@babel/plugin-syntax-import-assertions/-/plugin-syntax-import-assertions-7.24.7.tgz",
- "integrity": "sha512-Ec3NRUMoi8gskrkBe3fNmEQfxDvY8bgfQpz6jlk/41kX9eUjvpyqWU7PBP/pLAvMaSQjbMNKJmvX57jP+M6bPg==",
+ "version": "7.26.0",
+ "resolved": "https://registry.npmjs.org/@babel/plugin-syntax-import-assertions/-/plugin-syntax-import-assertions-7.26.0.tgz",
+ "integrity": "sha512-QCWT5Hh830hK5EQa7XzuqIkQU9tT/whqbDz7kuaZMHFl1inRRg7JnuAEOQ0Ur0QUl0NufCk1msK2BeY79Aj/eg==",
"dev": true,
+ "license": "MIT",
"dependencies": {
- "@babel/helper-plugin-utils": "^7.24.7"
+ "@babel/helper-plugin-utils": "^7.25.9"
},
"engines": {
"node": ">=6.9.0"
@@ -1206,6 +1198,198 @@
"node": ">=6.9.0"
}
},
+ "node_modules/@envelop/core": {
+ "version": "5.0.3",
+ "resolved": "https://registry.npmjs.org/@envelop/core/-/core-5.0.3.tgz",
+ "integrity": "sha512-SE3JxL7odst8igN6x77QWyPpXKXz/Hs5o5Y27r+9Br6WHIhkW90lYYVITWIJQ/qYgn5PkpbaVgeFY9rgqQaZ/A==",
+ "dev": true,
+ "license": "MIT",
+ "dependencies": {
+ "@envelop/types": "5.0.0",
+ "tslib": "^2.5.0"
+ },
+ "engines": {
+ "node": ">=18.0.0"
+ }
+ },
+ "node_modules/@envelop/types": {
+ "version": "5.0.0",
+ "resolved": "https://registry.npmjs.org/@envelop/types/-/types-5.0.0.tgz",
+ "integrity": "sha512-IPjmgSc4KpQRlO4qbEDnBEixvtb06WDmjKfi/7fkZaryh5HuOmTtixe1EupQI5XfXO8joc3d27uUZ0QdC++euA==",
+ "dev": true,
+ "license": "MIT",
+ "dependencies": {
+ "tslib": "^2.5.0"
+ },
+ "engines": {
+ "node": ">=18.0.0"
+ }
+ },
+ "node_modules/@eslint-community/eslint-utils": {
+ "version": "4.4.1",
+ "resolved": "https://registry.npmjs.org/@eslint-community/eslint-utils/-/eslint-utils-4.4.1.tgz",
+ "integrity": "sha512-s3O3waFUrMV8P/XaF/+ZTp1X9XBZW1a4B97ZnjQF2KYWaFD2A8KyFBsrsfSjEmjn3RGWAIuvlneuZm3CUK3jbA==",
+ "dev": true,
+ "license": "MIT",
+ "peer": true,
+ "dependencies": {
+ "eslint-visitor-keys": "^3.4.3"
+ },
+ "engines": {
+ "node": "^12.22.0 || ^14.17.0 || >=16.0.0"
+ },
+ "funding": {
+ "url": "https://opencollective.com/eslint"
+ },
+ "peerDependencies": {
+ "eslint": "^6.0.0 || ^7.0.0 || >=8.0.0"
+ }
+ },
+ "node_modules/@eslint-community/eslint-utils/node_modules/eslint-visitor-keys": {
+ "version": "3.4.3",
+ "resolved": "https://registry.npmjs.org/eslint-visitor-keys/-/eslint-visitor-keys-3.4.3.tgz",
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+ "dev": true,
+ "license": "Apache-2.0",
+ "peer": true,
+ "engines": {
+ "node": "^12.22.0 || ^14.17.0 || >=16.0.0"
+ },
+ "funding": {
+ "url": "https://opencollective.com/eslint"
+ }
+ },
+ "node_modules/@eslint-community/regexpp": {
+ "version": "4.12.1",
+ "resolved": "https://registry.npmjs.org/@eslint-community/regexpp/-/regexpp-4.12.1.tgz",
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+ "license": "MIT",
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+ }
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+ "node_modules/@eslint/config-array": {
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+ "resolved": "https://registry.npmjs.org/@eslint/config-array/-/config-array-0.19.2.tgz",
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+ "dev": true,
+ "license": "Apache-2.0",
+ "peer": true,
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+ "@eslint/object-schema": "^2.1.6",
+ "debug": "^4.3.1",
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+ },
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+ }
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+ "dev": true,
+ "license": "Apache-2.0",
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+ "@types/json-schema": "^7.0.15"
+ },
+ "engines": {
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+ }
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+ "node_modules/@eslint/eslintrc": {
+ "version": "3.2.0",
+ "resolved": "https://registry.npmjs.org/@eslint/eslintrc/-/eslintrc-3.2.0.tgz",
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+ "dev": true,
+ "license": "MIT",
+ "peer": true,
+ "dependencies": {
+ "ajv": "^6.12.4",
+ "debug": "^4.3.2",
+ "espree": "^10.0.1",
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+ "ignore": "^5.2.0",
+ "import-fresh": "^3.2.1",
+ "js-yaml": "^4.1.0",
+ "minimatch": "^3.1.2",
+ "strip-json-comments": "^3.1.1"
+ },
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+ },
+ "funding": {
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+ }
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+ "node_modules/@eslint/eslintrc/node_modules/globals": {
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+ "resolved": "https://registry.npmjs.org/globals/-/globals-14.0.0.tgz",
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+ "dev": true,
+ "license": "MIT",
+ "peer": true,
+ "engines": {
+ "node": ">=18"
+ },
+ "funding": {
+ "url": "https://github.com/sponsors/sindresorhus"
+ }
+ },
+ "node_modules/@eslint/js": {
+ "version": "9.20.0",
+ "resolved": "https://registry.npmjs.org/@eslint/js/-/js-9.20.0.tgz",
+ "integrity": "sha512-iZA07H9io9Wn836aVTytRaNqh00Sad+EamwOVJT12GTLw1VGMFV/4JaME+JjLtr9fiGaoWgYnS54wrfWsSs4oQ==",
+ "dev": true,
+ "license": "MIT",
+ "peer": true,
+ "engines": {
+ "node": "^18.18.0 || ^20.9.0 || >=21.1.0"
+ }
+ },
+ "node_modules/@eslint/object-schema": {
+ "version": "2.1.6",
+ "resolved": "https://registry.npmjs.org/@eslint/object-schema/-/object-schema-2.1.6.tgz",
+ "integrity": "sha512-RBMg5FRL0I0gs51M/guSAj5/e14VQ4tpZnQNWwuDT66P14I43ItmPfIZRhO9fUVIPOAQXU47atlywZ/czoqFPA==",
+ "dev": true,
+ "license": "Apache-2.0",
+ "peer": true,
+ "engines": {
+ "node": "^18.18.0 || ^20.9.0 || >=21.1.0"
+ }
+ },
+ "node_modules/@eslint/plugin-kit": {
+ "version": "0.2.5",
+ "resolved": "https://registry.npmjs.org/@eslint/plugin-kit/-/plugin-kit-0.2.5.tgz",
+ "integrity": "sha512-lB05FkqEdUg2AA0xEbUz0SnkXT1LcCTa438W4IWTUh4hdOnVbQyOJ81OrDXsJk/LSiJHubgGEFoR5EHq1NsH1A==",
+ "dev": true,
+ "license": "Apache-2.0",
+ "peer": true,
+ "dependencies": {
+ "@eslint/core": "^0.10.0",
+ "levn": "^0.4.1"
+ },
+ "engines": {
+ "node": "^18.18.0 || ^20.9.0 || >=21.1.0"
+ }
+ },
+ "node_modules/@eslint/plugin-kit/node_modules/@eslint/core": {
+ "version": "0.10.0",
+ "resolved": "https://registry.npmjs.org/@eslint/core/-/core-0.10.0.tgz",
+ "integrity": "sha512-gFHJ+xBOo4G3WRlR1e/3G8A6/KZAH6zcE/hkLRCZTi/B9avAG365QhFA8uOGzTMqgTghpn7/fSnscW++dpMSAw==",
+ "dev": true,
+ "license": "Apache-2.0",
+ "peer": true,
+ "dependencies": {
+ "@types/json-schema": "^7.0.15"
+ },
+ "engines": {
+ "node": "^18.18.0 || ^20.9.0 || >=21.1.0"
+ }
+ },
"node_modules/@graphql-codegen/core": {
"version": "4.0.2",
"resolved": "https://registry.npmjs.org/@graphql-codegen/core/-/core-4.0.2.tgz",
@@ -1353,234 +1537,255 @@
}
},
"node_modules/@graphql-eslint/eslint-plugin": {
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- "resolved": "https://registry.npmjs.org/@graphql-eslint/eslint-plugin/-/eslint-plugin-3.20.1.tgz",
- "integrity": "sha512-RbwVlz1gcYG62sECR1u0XqMh8w5e5XMCCZoMvPQ3nJzEBCTfXLGX727GBoRmSvY1x4gJmqNZ1lsOX7lZY14RIw==",
+ "version": "4.3.0",
+ "resolved": "https://registry.npmjs.org/@graphql-eslint/eslint-plugin/-/eslint-plugin-4.3.0.tgz",
+ "integrity": "sha512-9UTJfYNGAK5GuFapsNvA+508ke8YPc9Yt6mgT4Lc+gS18p53oG5wmXd3jdmNeVOfxhUefJcJbn925vIrjg/8/g==",
"dev": true,
+ "license": "MIT",
"dependencies": {
- "@babel/code-frame": "^7.18.6",
- "@graphql-tools/code-file-loader": "^7.3.6",
- "@graphql-tools/graphql-tag-pluck": "^7.3.6",
- "@graphql-tools/utils": "^9.0.0",
- "chalk": "^4.1.2",
+ "@graphql-tools/code-file-loader": "^8.0.0",
+ "@graphql-tools/graphql-tag-pluck": "^8.3.4",
+ "@graphql-tools/utils": "^10.0.0",
"debug": "^4.3.4",
"fast-glob": "^3.2.12",
- "graphql-config": "^4.4.0",
+ "graphql-config": "^5.1.3",
"graphql-depth-limit": "^1.1.0",
- "lodash.lowercase": "^4.3.0",
- "tslib": "^2.4.1"
+ "lodash.lowercase": "^4.3.0"
},
"engines": {
- "node": ">=12"
+ "node": ">=18"
},
"peerDependencies": {
- "graphql": "^0.8.0 || ^0.9.0 || ^0.10.0 || ^0.11.0 || ^0.12.0 || ^0.13.0 || ^14.0.0 || ^15.0.0 || ^16.0.0"
+ "@apollo/subgraph": "^2",
+ "eslint": ">=8.44.0",
+ "graphql": "^16",
+ "json-schema-to-ts": "^3"
+ },
+ "peerDependenciesMeta": {
+ "@apollo/subgraph": {
+ "optional": true
+ },
+ "json-schema-to-ts": {
+ "optional": true
+ }
}
},
- "node_modules/@graphql-tools/batch-execute": {
- "version": "8.5.22",
- "resolved": "https://registry.npmjs.org/@graphql-tools/batch-execute/-/batch-execute-8.5.22.tgz",
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+ "node_modules/@graphql-eslint/eslint-plugin/node_modules/@graphql-tools/utils": {
+ "version": "10.8.1",
+ "resolved": "https://registry.npmjs.org/@graphql-tools/utils/-/utils-10.8.1.tgz",
+ "integrity": "sha512-fI5NNuqeEAHyp7NuCDjvxWR5PTUXM4AqY9BoC59ZcX4nePAJje27ZsFHbAMS6EKDosY1K/D4ADxsO0P5+FH07A==",
"dev": true,
+ "license": "MIT",
"dependencies": {
- "@graphql-tools/utils": "^9.2.1",
- "dataloader": "^2.2.2",
- "tslib": "^2.4.0",
- "value-or-promise": "^1.0.12"
+ "@graphql-typed-document-node/core": "^3.1.1",
+ "cross-inspect": "1.0.1",
+ "dset": "^3.1.4",
+ "tslib": "^2.4.0"
+ },
+ "engines": {
+ "node": ">=16.0.0"
},
"peerDependencies": {
"graphql": "^14.0.0 || ^15.0.0 || ^16.0.0 || ^17.0.0"
}
},
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+ "node_modules/@graphql-eslint/eslint-plugin/node_modules/cross-inspect": {
+ "version": "1.0.1",
+ "resolved": "https://registry.npmjs.org/cross-inspect/-/cross-inspect-1.0.1.tgz",
+ "integrity": "sha512-Pcw1JTvZLSJH83iiGWt6fRcT+BjZlCDRVwYLbUcHzv/CRpB7r0MlSrGbIyQvVSNyGnbt7G4AXuyCiDR3POvZ1A==",
"dev": true,
+ "license": "MIT",
"dependencies": {
- "@graphql-tools/graphql-tag-pluck": "7.5.2",
- "@graphql-tools/utils": "^9.2.1",
- "globby": "^11.0.3",
- "tslib": "^2.4.0",
- "unixify": "^1.0.0"
+ "tslib": "^2.4.0"
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},
"engines": {
@@ -1737,14 +2334,27 @@
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}
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+ "resolved": "https://registry.npmjs.org/cross-inspect/-/cross-inspect-1.0.1.tgz",
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"dev": true,
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"dev": true,
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"dependencies": {
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},
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@@ -1773,6 +2384,19 @@
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}
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+ "license": "MIT",
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"version": "2.0.0",
"resolved": "https://registry.npmjs.org/@graphql-tools/optimize/-/optimize-2.0.0.tgz",
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- "@graphql-tools/utils": "^10.2.1",
- "tslib": "^2.4.0",
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"engines": {
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}
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+ "license": "MIT",
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"dev": true,
+ "license": "MIT",
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},
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}
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"dev": true,
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- "@graphql-tools/utils": "^9.2.1",
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"dev": true,
+ "license": "MIT",
"dependencies": {
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},
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"dev": true,
+ "license": "MIT",
"dependencies": {
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- "@graphql-tools/utils": "^9.2.1",
- "tslib": "^2.4.0",
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+ "tslib": "^2.4.0"
},
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},
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+ "dev": true,
+ "license": "0BSD"
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"resolved": "https://registry.npmjs.org/@graphql-typed-document-node/core/-/core-3.2.0.tgz",
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}
},
- "node_modules/@josephg/resolvable": {
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+ "resolved": "https://registry.npmjs.org/@humanfs/core/-/core-0.19.1.tgz",
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+ "dev": true,
+ "license": "Apache-2.0",
+ "peer": true,
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+ "node_modules/@humanfs/node": {
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+ "resolved": "https://registry.npmjs.org/@humanfs/node/-/node-0.16.6.tgz",
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+ "license": "Apache-2.0",
+ "peer": true,
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+ "resolved": "https://registry.npmjs.org/@humanwhocodes/retry/-/retry-0.3.1.tgz",
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+ "license": "Apache-2.0",
+ "peer": true,
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+ "funding": {
+ "type": "github",
+ "url": "https://github.com/sponsors/nzakas"
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+ "dev": true,
+ "license": "Apache-2.0",
+ "peer": true,
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+ "funding": {
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+ "url": "https://github.com/sponsors/nzakas"
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+ "node_modules/@humanwhocodes/retry": {
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+ "resolved": "https://registry.npmjs.org/@humanwhocodes/retry/-/retry-0.4.1.tgz",
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+ "dev": true,
+ "license": "Apache-2.0",
+ "peer": true,
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+ "funding": {
+ "type": "github",
+ "url": "https://github.com/sponsors/nzakas"
+ }
},
"node_modules/@jridgewell/gen-mapping": {
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@@ -2025,24 +2776,26 @@
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+ "license": "Apache-2.0",
"engines": {
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}
},
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+ "version": "5.11.5",
+ "resolved": "https://registry.npmjs.org/@neo4j/graphql/-/graphql-5.11.5.tgz",
+ "integrity": "sha512-jQv6ywR9JwrZTIm1VvvnURMt+8aNc4C7VxWChYTWtTljSKTU8x2jG6uAfuUBkTya2kT30nlc7y192OaFcUt9tQ==",
+ "license": "Apache-2.0",
"dependencies": {
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+ "@neo4j/cypher-builder": "^1.20.1",
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@@ -2063,15 +2816,16 @@
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+ "version": "5.11.5",
+ "resolved": "https://registry.npmjs.org/@neo4j/graphql-ogm/-/graphql-ogm-5.11.5.tgz",
+ "integrity": "sha512-LrkRD10tJRxcpmyF/yMiOctONSxC62m9ufIPJ0sBiI9FWpHgurEXjS1OupHPiUS9ZvSJgvJDzMoA2KcdvD4GQA==",
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"@graphql-codegen/plugin-helpers": "^5.0.0",
"@graphql-codegen/typescript": "^4.0.0",
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- "@neo4j/graphql": "^5.4.4",
+ "@neo4j/graphql": "^5.11.5",
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},
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@@ -2083,12 +2837,13 @@
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+ "version": "10.6.1",
+ "resolved": "https://registry.npmjs.org/@graphql-tools/utils/-/utils-10.6.1.tgz",
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+ "license": "MIT",
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- "cross-inspect": "1.0.0",
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},
@@ -2099,6 +2854,18 @@
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}
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+ "version": "1.0.1",
+ "resolved": "https://registry.npmjs.org/cross-inspect/-/cross-inspect-1.0.1.tgz",
+ "integrity": "sha512-Pcw1JTvZLSJH83iiGWt6fRcT+BjZlCDRVwYLbUcHzv/CRpB7r0MlSrGbIyQvVSNyGnbt7G4AXuyCiDR3POvZ1A==",
+ "license": "MIT",
+ "dependencies": {
+ "tslib": "^2.4.0"
+ },
+ "engines": {
+ "node": ">=16.0.0"
+ }
+ },
"node_modules/@neo4j/graphql/node_modules/semver": {
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"resolved": "https://registry.npmjs.org/semver/-/semver-7.6.2.tgz",
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- "dev": true,
- "dependencies": {
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- },
- "engines": {
- "node": ">=8.0.0"
+ "node": ">= 8"
}
},
- "node_modules/@peculiar/webcrypto": {
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- "resolved": "https://registry.npmjs.org/@peculiar/webcrypto/-/webcrypto-1.5.0.tgz",
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- "dev": true,
+ "node_modules/@nodelib/fs.walk": {
+ "version": "1.2.8",
+ "resolved": "https://registry.npmjs.org/@nodelib/fs.walk/-/fs.walk-1.2.8.tgz",
+ "integrity": "sha512-oGB+UxlgWcgQkgwo8GcEGwemoTFt3FIO9ababBmaGwXIoBKZ+GTy0pP185beGg7Llih/NSHSV2XAs1lnznocSg==",
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- "pvtsutils": "^1.3.5",
- "tslib": "^2.6.2",
- "webcrypto-core": "^1.8.0"
+ "@nodelib/fs.scandir": "2.1.5",
+ "fastq": "^1.6.0"
},
"engines": {
- "node": ">=10.12.0"
+ "node": ">= 8"
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@@ -2239,7 +2967,8 @@
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- "dev": true
+ "dev": true,
+ "license": "MIT"
},
"node_modules/@types/body-parser": {
"version": "1.19.5",
@@ -2258,6 +2987,14 @@
"@types/node": "*"
}
},
+ "node_modules/@types/estree": {
+ "version": "1.0.6",
+ "resolved": "https://registry.npmjs.org/@types/estree/-/estree-1.0.6.tgz",
+ "integrity": "sha512-AYnb1nQyY49te+VRAVgmzfcgjYS91mY5P0TKUDCLEM+gNnA+3T6rWITXRLYCpahpqSQbN5cE+gHpnPyXjHWxcw==",
+ "dev": true,
+ "license": "MIT",
+ "peer": true
+ },
"node_modules/@types/express": {
"version": "4.17.21",
"resolved": "https://registry.npmjs.org/@types/express/-/express-4.17.21.tgz",
@@ -2285,6 +3022,14 @@
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},
+ "node_modules/@types/json-schema": {
+ "version": "7.0.15",
+ "resolved": "https://registry.npmjs.org/@types/json-schema/-/json-schema-7.0.15.tgz",
+ "integrity": "sha512-5+fP8P8MFNC+AyZCDxrB2pkZFPGzqQWUzpSeuuVLvm8VMcorNYavBqoFcxK8bQz4Qsbn4oUEEem4wDLfcysGHA==",
+ "dev": true,
+ "license": "MIT",
+ "peer": true
+ },
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"resolved": "https://registry.npmjs.org/@types/long/-/long-4.0.2.tgz",
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},
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- "resolved": "https://registry.npmjs.org/@types/ws/-/ws-8.5.10.tgz",
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+ "resolved": "https://registry.npmjs.org/@types/ws/-/ws-8.5.14.tgz",
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"dev": true,
+ "license": "MIT",
"dependencies": {
"@types/node": "*"
}
},
- "node_modules/@whatwg-node/events": {
- "version": "0.0.3",
- "resolved": "https://registry.npmjs.org/@whatwg-node/events/-/events-0.0.3.tgz",
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- "dev": true
+ "node_modules/@whatwg-node/disposablestack": {
+ "version": "0.0.5",
+ "resolved": "https://registry.npmjs.org/@whatwg-node/disposablestack/-/disposablestack-0.0.5.tgz",
+ "integrity": "sha512-9lXugdknoIequO4OYvIjhygvfSEgnO8oASLqLelnDhkRjgBZhc39shC3QSlZuyDO9bgYSIVa2cHAiN+St3ty4w==",
+ "dev": true,
+ "license": "MIT",
+ "dependencies": {
+ "tslib": "^2.6.3"
+ },
+ "engines": {
+ "node": ">=18.0.0"
+ }
},
"node_modules/@whatwg-node/fetch": {
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- "resolved": "https://registry.npmjs.org/@whatwg-node/fetch/-/fetch-0.8.8.tgz",
- "integrity": "sha512-CdcjGC2vdKhc13KKxgsc6/616BQ7ooDIgPeTuAiE8qfCnS0mGzcfCOoZXypQSz73nxI+GWc7ZReIAVhxoE1KCg==",
+ "version": "0.10.3",
+ "resolved": "https://registry.npmjs.org/@whatwg-node/fetch/-/fetch-0.10.3.tgz",
+ "integrity": "sha512-jCTL/qYcIW2GihbBRHypQ/Us7saWMNZ5fsumsta+qPY0Pmi1ccba/KRQvgctmQsbP69FWemJSs8zVcFaNwdL0w==",
"dev": true,
+ "license": "MIT",
"dependencies": {
- "@peculiar/webcrypto": "^1.4.0",
- "@whatwg-node/node-fetch": "^0.3.6",
- "busboy": "^1.6.0",
- "urlpattern-polyfill": "^8.0.0",
- "web-streams-polyfill": "^3.2.1"
+ "@whatwg-node/node-fetch": "^0.7.7",
+ "urlpattern-polyfill": "^10.0.0"
+ },
+ "engines": {
+ "node": ">=18.0.0"
}
},
"node_modules/@whatwg-node/node-fetch": {
- "version": "0.3.6",
- "resolved": "https://registry.npmjs.org/@whatwg-node/node-fetch/-/node-fetch-0.3.6.tgz",
- "integrity": "sha512-w9wKgDO4C95qnXZRwZTfCmLWqyRnooGjcIwG0wADWjw9/HN0p7dtvtgSvItZtUyNteEvgTrd8QojNEqV6DAGTA==",
+ "version": "0.7.8",
+ "resolved": "https://registry.npmjs.org/@whatwg-node/node-fetch/-/node-fetch-0.7.8.tgz",
+ "integrity": "sha512-Pbv72nbu3AgL9ZaAwdzYcqoMhYGhSBxo49CC+Nt+tlhdDuMZXcf3+41qGghsGJykkxhgfgFcPLwtt2HPEjk57w==",
"dev": true,
+ "license": "MIT",
"dependencies": {
- "@whatwg-node/events": "^0.0.3",
+ "@whatwg-node/disposablestack": "^0.0.5",
"busboy": "^1.6.0",
- "fast-querystring": "^1.1.1",
- "fast-url-parser": "^1.1.3",
- "tslib": "^2.3.1"
+ "tslib": "^2.6.3"
+ },
+ "engines": {
+ "node": ">=18.0.0"
}
},
"node_modules/accepts": {
@@ -2399,6 +3155,49 @@
"node": ">= 0.6"
}
},
+ "node_modules/acorn": {
+ "version": "8.14.0",
+ "resolved": "https://registry.npmjs.org/acorn/-/acorn-8.14.0.tgz",
+ "integrity": "sha512-cl669nCJTZBsL97OF4kUQm5g5hC2uihk0NxY3WENAC0TYdILVkAyHymAntgxGkl7K+t0cXIrH5siy5S4XkFycA==",
+ "dev": true,
+ "license": "MIT",
+ "peer": true,
+ "bin": {
+ "acorn": "bin/acorn"
+ },
+ "engines": {
+ "node": ">=0.4.0"
+ }
+ },
+ "node_modules/acorn-jsx": {
+ "version": "5.3.2",
+ "resolved": "https://registry.npmjs.org/acorn-jsx/-/acorn-jsx-5.3.2.tgz",
+ "integrity": "sha512-rq9s+JNhf0IChjtDXxllJ7g41oZk5SlXtp0LHwyA5cejwn7vKmKp4pPri6YEePv2PU65sAsegbXtIinmDFDXgQ==",
+ "dev": true,
+ "license": "MIT",
+ "peer": true,
+ "peerDependencies": {
+ "acorn": "^6.0.0 || ^7.0.0 || ^8.0.0"
+ }
+ },
+ "node_modules/ajv": {
+ "version": "6.12.6",
+ "resolved": "https://registry.npmjs.org/ajv/-/ajv-6.12.6.tgz",
+ "integrity": "sha512-j3fVLgvTo527anyYyJOGTYJbG+vnnQYvE0m5mmkc1TK+nxAppkCLMIL0aZ4dblVCNoGShhm+kzE4ZUykBoMg4g==",
+ "dev": true,
+ "license": "MIT",
+ "peer": true,
+ "dependencies": {
+ "fast-deep-equal": "^3.1.1",
+ "fast-json-stable-stringify": "^2.0.0",
+ "json-schema-traverse": "^0.4.1",
+ "uri-js": "^4.2.2"
+ },
+ "funding": {
+ "type": "github",
+ "url": "https://github.com/sponsors/epoberezkin"
+ }
+ },
"node_modules/ansi-regex": {
"version": "5.0.1",
"resolved": "https://registry.npmjs.org/ansi-regex/-/ansi-regex-5.0.1.tgz",
@@ -2437,7 +3236,8 @@
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- "dev": true
+ "dev": true,
+ "license": "Python-2.0"
},
"node_modules/array-flatten": {
"version": "1.1.1",
@@ -2466,20 +3266,6 @@
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},
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- "dev": true,
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- "tslib": "^2.4.0"
- },
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"node_modules/async-retry": {
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"resolved": "https://registry.npmjs.org/async-retry/-/async-retry-1.3.3.tgz",
@@ -2568,7 +3354,8 @@
"type": "consulting",
"url": "https://feross.org/support"
}
- ]
+ ],
+ "license": "MIT"
},
"node_modules/binary-extensions": {
"version": "2.3.0",
@@ -2582,9 +3369,10 @@
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- "resolved": "https://registry.npmjs.org/body-parser/-/body-parser-1.20.2.tgz",
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+ "version": "1.20.3",
+ "resolved": "https://registry.npmjs.org/body-parser/-/body-parser-1.20.3.tgz",
+ "integrity": "sha512-7rAxByjUMqQ3/bHJy7D6OGXvx/MMc4IqBn/X0fcM1QUcAItpZrBEYhWGem+tzXH90c+G01ypMcYJBO9Y30203g==",
+ "license": "MIT",
"dependencies": {
"bytes": "3.1.2",
"content-type": "~1.0.5",
@@ -2594,7 +3382,7 @@
"http-errors": "2.0.0",
"iconv-lite": "0.4.24",
"on-finished": "2.4.1",
- "qs": "6.11.0",
+ "qs": "6.13.0",
"raw-body": "2.5.2",
"type-is": "~1.6.18",
"unpipe": "1.0.0"
@@ -2608,6 +3396,7 @@
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+ "license": "MIT",
"dependencies": {
"ms": "2.0.0"
}
@@ -2615,7 +3404,8 @@
"node_modules/body-parser/node_modules/ms": {
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+ "integrity": "sha512-Tpp60P6IUJDTuOq/5Z8cdskzJujfwqfOTkrwIwj7IRISpnkJnT6SyJ4PCPnGMoFjC9ddhal5KVIYtAt97ix05A==",
+ "license": "MIT"
},
"node_modules/brace-expansion": {
"version": "1.1.11",
@@ -2694,6 +3484,7 @@
"url": "https://feross.org/support"
}
],
+ "license": "MIT",
"dependencies": {
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@@ -2715,20 +3506,32 @@
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+ "license": "MIT",
"engines": {
"node": ">= 0.8"
}
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- "resolved": "https://registry.npmjs.org/call-bind/-/call-bind-1.0.7.tgz",
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+ "node_modules/call-bind-apply-helpers": {
+ "version": "1.0.1",
+ "resolved": "https://registry.npmjs.org/call-bind-apply-helpers/-/call-bind-apply-helpers-1.0.1.tgz",
+ "integrity": "sha512-BhYE+WDaywFg2TBWYNXAE+8B1ATnThNBqXHP5nQu0jWJdVvY2hvkpyB3qOmtmDePiS5/BDQ8wASEWGMWRG148g==",
+ "license": "MIT",
"dependencies": {
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"es-errors": "^1.3.0",
- "function-bind": "^1.1.2",
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- "set-function-length": "^1.2.1"
+ "function-bind": "^1.1.2"
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+ "engines": {
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+ "node_modules/call-bound": {
+ "version": "1.0.3",
+ "resolved": "https://registry.npmjs.org/call-bound/-/call-bound-1.0.3.tgz",
+ "integrity": "sha512-YTd+6wGlNlPxSuri7Y6X8tY2dmm12UMH66RpKMhiX6rsk5wXXnYgbUcOt8kiS31/AjfoTOvCsE+w8nZQLQnzHA==",
+ "license": "MIT",
+ "dependencies": {
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+ "get-intrinsic": "^1.2.6"
},
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@@ -2742,6 +3545,7 @@
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"dev": true,
+ "license": "MIT",
"engines": {
"node": ">=6"
}
@@ -2944,6 +3748,7 @@
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}
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},
"funding": {
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}
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"dev": true,
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+ },
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+ "url": "https://github.com/sponsors/isaacs"
}
},
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+ "license": "MIT",
"dependencies": {
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},
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+ "version": "6.0.3",
+ "resolved": "https://registry.npmjs.org/graphql-ws/-/graphql-ws-6.0.3.tgz",
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"dev": true,
+ "license": "MIT",
"engines": {
- "node": ">=10"
+ "node": ">=20"
},
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- "graphql": ">=0.11 <=16"
+ "@fastify/websocket": "^10 || ^11",
+ "graphql": "^15.10.1 || ^16",
+ "uWebSockets.js": "^20",
+ "ws": "^8"
+ },
+ "peerDependenciesMeta": {
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+ },
+ "uWebSockets.js": {
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+ },
+ "ws": {
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+ }
}
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"engines": {
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- "engines": {
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- },
- "funding": {
- "url": "https://github.com/sponsors/ljharb"
+ "node": ">=8"
}
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+ "version": "1.1.0",
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+ "license": "MIT",
"engines": {
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+ "license": "MIT",
"dependencies": {
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},
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+ "license": "MIT",
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+ "license": "MIT",
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},
@@ -3880,7 +5063,8 @@
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"dev": true,
+ "license": "MIT",
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"dev": true,
+ "license": "MIT",
"engines": {
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}
@@ -3939,6 +5125,17 @@
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}
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+ "resolved": "https://registry.npmjs.org/imurmurhash/-/imurmurhash-0.1.4.tgz",
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+ "dev": true,
+ "license": "MIT",
+ "peer": true,
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+ "dev": true,
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},
"node_modules/is-binary-path": {
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@@ -4088,22 +5286,32 @@
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+ "dev": true,
+ "license": "ISC",
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"dev": true,
+ "license": "MIT",
"peerDependencies": {
"ws": "*"
}
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+ "version": "2.4.2",
+ "resolved": "https://registry.npmjs.org/jiti/-/jiti-2.4.2.tgz",
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"dev": true,
+ "license": "MIT",
"bin": {
- "jiti": "bin/jiti.js"
+ "jiti": "lib/jiti-cli.mjs"
}
},
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@@ -4132,6 +5340,7 @@
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+ "license": "MIT",
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+ "license": "MIT",
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+ "license": "MIT"
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+ "license": "(MIT AND BSD-3-Clause)",
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@@ -5114,15 +6459,95 @@
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+ "dev": true,
+ "license": "MIT",
+ "peer": true,
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+ "funding": {
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+ "resolved": "https://registry.npmjs.org/side-channel-weakmap/-/side-channel-weakmap-1.0.2.tgz",
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+ "license": "MIT",
"dependencies": {
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+ "license": "MIT",
"engines": {
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+ "license": "MIT",
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@@ -5238,6 +6666,20 @@
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+ "license": "MIT",
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@@ -5257,6 +6699,60 @@
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+ "dev": true,
+ "license": "MIT",
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+ "whatwg-mimetype": "^4.0.0"
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+ "dev": true,
+ "license": "MIT",
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+ "resolved": "https://registry.npmjs.org/timeout-signal/-/timeout-signal-2.0.0.tgz",
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+ "dev": true,
+ "license": "MIT",
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+ "license": "MIT",
"engines": {
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"version": "1.6.18",
"resolved": "https://registry.npmjs.org/type-is/-/type-is-1.6.18.tgz",
"integrity": "sha512-TkRKr9sUTxEH8MdfuCSP7VizJyzRNMjj2J2do2Jr3Kym598JVdEksuzPQCnlFPW4ky9Q+iA+ma9BGm06XQBy8g==",
+ "license": "MIT",
"dependencies": {
"media-typer": "0.3.0",
"mime-types": "~2.1.24"
@@ -5393,6 +6905,7 @@
"version": "1.0.0",
"resolved": "https://registry.npmjs.org/unpipe/-/unpipe-1.0.0.tgz",
"integrity": "sha512-pjy2bYhSsufwWlKwPc+l3cN7+wuJlK6uz0YdJEOlQDbl6jo/YlPi4mb8agUkVC8BF7V8NuzeyPNqRksA3hztKQ==",
+ "license": "MIT",
"engines": {
"node": ">= 0.8"
}
@@ -5442,11 +6955,23 @@
"tslib": "^2.0.3"
}
},
+ "node_modules/uri-js": {
+ "version": "4.4.1",
+ "resolved": "https://registry.npmjs.org/uri-js/-/uri-js-4.4.1.tgz",
+ "integrity": "sha512-7rKUyy33Q1yc98pQ1DAmLtwX109F7TIfWlW1Ydo8Wl1ii1SeHieeh0HHfPeL2fMXK6z0s8ecKs9frCuLJvndBg==",
+ "dev": true,
+ "license": "BSD-2-Clause",
+ "peer": true,
+ "dependencies": {
+ "punycode": "^2.1.0"
+ }
+ },
"node_modules/urlpattern-polyfill": {
- "version": "8.0.2",
- "resolved": "https://registry.npmjs.org/urlpattern-polyfill/-/urlpattern-polyfill-8.0.2.tgz",
- "integrity": "sha512-Qp95D4TPJl1kC9SKigDcqgyM2VDVO4RiJc2d4qe5GrYm+zbIQCWWKAFaJNQ4BhdFeDGwBmAxqJBwWSJDb9T3BQ==",
- "dev": true
+ "version": "10.0.0",
+ "resolved": "https://registry.npmjs.org/urlpattern-polyfill/-/urlpattern-polyfill-10.0.0.tgz",
+ "integrity": "sha512-H/A06tKD7sS1O1X2SshBVeA5FLycRpjqiBeqGKmBwBDBy28EnRjORxTNe269KSSr5un5qyWi1iL61wLxpd+ZOg==",
+ "dev": true,
+ "license": "MIT"
},
"node_modules/utils-merge": {
"version": "1.0.1",
@@ -5489,23 +7014,11 @@
"resolved": "https://registry.npmjs.org/web-streams-polyfill/-/web-streams-polyfill-3.3.3.tgz",
"integrity": "sha512-d2JWLCivmZYTSIoge9MsgFCZrt571BikcWGYkjC1khllbTeDlGqZ2D8vD8E/lJa8WGWbb7Plm8/XJYV7IJHZZw==",
"dev": true,
+ "license": "MIT",
"engines": {
"node": ">= 8"
}
},
- "node_modules/webcrypto-core": {
- "version": "1.8.0",
- "resolved": "https://registry.npmjs.org/webcrypto-core/-/webcrypto-core-1.8.0.tgz",
- "integrity": "sha512-kR1UQNH8MD42CYuLzvibfakG5Ew5seG85dMMoAM/1LqvckxaF6pUiidLuraIu4V+YCIFabYecUZAW0TuxAoaqw==",
- "dev": true,
- "dependencies": {
- "@peculiar/asn1-schema": "^2.3.8",
- "@peculiar/json-schema": "^1.1.12",
- "asn1js": "^3.0.1",
- "pvtsutils": "^1.3.5",
- "tslib": "^2.6.2"
- }
- },
"node_modules/webidl-conversions": {
"version": "3.0.1",
"resolved": "https://registry.npmjs.org/webidl-conversions/-/webidl-conversions-3.0.1.tgz",
@@ -5528,11 +7041,39 @@
"webidl-conversions": "^3.0.0"
}
},
+ "node_modules/which": {
+ "version": "2.0.2",
+ "resolved": "https://registry.npmjs.org/which/-/which-2.0.2.tgz",
+ "integrity": "sha512-BLI3Tl1TW3Pvl70l3yq3Y64i+awpwXqsGBYWkkqMtnbXgrMD+yj7rhW0kuEDxzJaYXGjEW5ogapKNMEKNMjibA==",
+ "dev": true,
+ "license": "ISC",
+ "peer": true,
+ "dependencies": {
+ "isexe": "^2.0.0"
+ },
+ "bin": {
+ "node-which": "bin/node-which"
+ },
+ "engines": {
+ "node": ">= 8"
+ }
+ },
"node_modules/which-module": {
"version": "2.0.1",
"resolved": "https://registry.npmjs.org/which-module/-/which-module-2.0.1.tgz",
"integrity": "sha512-iBdZ57RDvnOR9AGBhML2vFZf7h8vmBjhoaZqODJBFWHVtKkDmKuHai3cx5PgVMrX5YDNp27AofYbAwctSS+vhQ=="
},
+ "node_modules/word-wrap": {
+ "version": "1.2.5",
+ "resolved": "https://registry.npmjs.org/word-wrap/-/word-wrap-1.2.5.tgz",
+ "integrity": "sha512-BN22B5eaMMI9UMtjrGd5g5eCYPpCPDUy0FJXbYsaT5zYxjFOckS53SQDE3pWkVoWpHXVb3BrYcEN4Twa55B5cA==",
+ "dev": true,
+ "license": "MIT",
+ "peer": true,
+ "engines": {
+ "node": ">=0.10.0"
+ }
+ },
"node_modules/wrap-ansi": {
"version": "6.2.0",
"resolved": "https://registry.npmjs.org/wrap-ansi/-/wrap-ansi-6.2.0.tgz",
@@ -5552,10 +7093,11 @@
"integrity": "sha512-l4Sp/DRseor9wL6EvV2+TuQn63dMkPjZ/sp9XkghTEbV9KlPS1xUsZ3u7/IQO4wxtcFB4bgpQPRcR3QCvezPcQ=="
},
"node_modules/ws": {
- "version": "8.17.1",
- "resolved": "https://registry.npmjs.org/ws/-/ws-8.17.1.tgz",
- "integrity": "sha512-6XQFvXTkbfUOZOKKILFG1PDK2NDQs4azKQl26T0YS5CxqWLgXajbPZ+h4gZekJyRqFU8pvnbAbbs/3TgRPy+GQ==",
+ "version": "8.18.0",
+ "resolved": "https://registry.npmjs.org/ws/-/ws-8.18.0.tgz",
+ "integrity": "sha512-8VbfWfHLbbwu3+N6OKsOMpBdT4kXPDDB9cJk2bJ6mh9ucxdlnNvH1e+roYkKmN9Nxw2yjz7VzeO9oOz2zJ04Pw==",
"dev": true,
+ "license": "MIT",
"engines": {
"node": ">=10.0.0"
},
diff --git a/package.json b/package.json
index 28be7c6c0ef6661d0caf9851284ddd85475bbd2c..11bd21d37fcc5ee95e08c42371e0ab7a1c4cada2 100644
--- a/package.json
+++ b/package.json
@@ -5,7 +5,8 @@
"main": "server/index.js",
"type": "module",
"scripts": {
- "start": "nodemon --watch './server'"
+ "start": "nodemon --watch './server'",
+ "debug": "nodemon --inspect=0.0.0.0 --watch './server'"
},
"license": "AGPL-version-3.0",
"private": false,
@@ -27,19 +28,20 @@
},
"contributors": [],
"dependencies": {
- "@apollo/server": "^4.10.0",
- "@graphql-tools/graphql-file-loader": "^8.0.1",
- "@graphql-tools/load": "^8.0.1",
- "@neo4j/graphql": "^5.4.4",
- "express": "^4.18.2",
- "graphql": "^16.8.1",
+ "@apollo/server": "^4.11.3",
+ "@graphql-tools/graphql-file-loader": "^8.0.14",
+ "@graphql-tools/load": "^8.0.14",
+ "@neo4j/graphql": "^5.11.5",
+ "@neo4j/graphql-ogm": "^5.11.5",
+ "express": "^4.21.2",
+ "graphql": "^16.10.0",
"graphql-tag": "^2.12.6",
- "neo4j-driver": "^5.18.0",
- "nodemon": "^3.0.3"
+ "neo4j-driver": "^5.28.1",
+ "nodemon": "^3.1.9"
},
"devDependencies": {
- "@graphql-eslint/eslint-plugin": "^3.20.1",
- "@graphql-tools/mock": "^9.0.1",
- "@graphql-tools/schema": "^10.0.2"
+ "@graphql-eslint/eslint-plugin": "^4.3.0",
+ "@graphql-tools/mock": "^9.0.17",
+ "@graphql-tools/schema": "^10.0.18"
}
}
diff --git a/server/resolvers.js b/server/resolvers.js
index 8223863a37e3792f44a1a7f79622c1936a221d1e..3c56d419cd1f1168a820c28b038942cbfe038cb0 100644
--- a/server/resolvers.js
+++ b/server/resolvers.js
@@ -3,7 +3,7 @@ import { resolvers as documentsResolver } from './resolvers/documents.js'
const resolvers = [
guideClassLabelResolver,
- documentsResolver
+ documentsResolver,
]
export default resolvers
\ No newline at end of file
diff --git a/server/schema.js b/server/schema.js
index 7e96991c0f3651f947a38cdf9fc3601767f14dfc..c8ac88dd2d98a0aa5f5b59fe19916c1814f8acee 100644
--- a/server/schema.js
+++ b/server/schema.js
@@ -13,6 +13,10 @@ import { typeDefs as genericSequenceDefs } from './schema/generic_sequence.js'
import { typeDefs as groupDefs } from './schema/guide_group.js'
import { typeDefs as clusterDefs } from './schema/cluster.js'
import { typeDefs as isoformDefs } from './schema/isoform.js'
+import { typeDefs as modificationMappingDefs } from './schema/modification_mapping.js'
+import { typeDefs as trackDefs } from './schema/track.js'
+import { typeDefs as alignmentDefs } from './schema/alignment.js'
+import { typeDefs as alignedModificationsDefs } from './schema/aligned_modifications.js'
import { typeDefs as entryDefs } from './schema/table_entry.js'
import { typeDefs as documentsDefs } from './schema/documents.js'
@@ -36,6 +40,10 @@ const typeDefs = [
groupDefs,
clusterDefs,
isoformDefs,
+ modificationMappingDefs,
+ alignedModificationsDefs,
+ trackDefs,
+ alignmentDefs,
documentsDefs,
schemaDef
]
diff --git a/server/schema/aligned_modifications.js b/server/schema/aligned_modifications.js
new file mode 100644
index 0000000000000000000000000000000000000000..8c91c8adc29a8e342ebd728a9987dfb1c488ef15
--- /dev/null
+++ b/server/schema/aligned_modifications.js
@@ -0,0 +1,14 @@
+import { gql } from 'graphql-tag'
+
+export const typeDefs = gql`
+"""
+A group of aligned modifications
+"""
+type AlignedModifications {
+ "The group id"
+ id: ID!
+
+ "The guides that are part of group"
+ modifications: [Modification!]! @relationship(type: "IS_PART_OF", direction: IN)
+}
+`
\ No newline at end of file
diff --git a/server/schema/alignment.js b/server/schema/alignment.js
new file mode 100644
index 0000000000000000000000000000000000000000..8521b5aba035a7a2c5b839986734a50232cee14c
--- /dev/null
+++ b/server/schema/alignment.js
@@ -0,0 +1,38 @@
+import { gql } from 'graphql-tag'
+
+export const typeDefs = gql`
+
+type Alignment {
+
+ "The alignment id"
+ id: ID!
+
+ "The name of the alignment (Optional)"
+ name: String
+
+ "The description of the alignment (Optional)"
+ description: String
+
+ "The sequences that are part of alignment"
+ sequences: [Sequence!]!
+
+ "A track is a sequence of something (including sequences)"
+ tracks: [Track!]! @relationship(type: "ALIGN_WITH", direction: IN)
+
+ "The type of alignment, either GUIDE or TARGET"
+ type: AlignType
+}
+
+
+enum AlignType {
+
+ "Alignment is about guides"
+ GUIDE
+
+ "Alignment is about targets"
+ TARGET
+
+ "Alignment is about something else"
+ OTHER
+}
+`
\ No newline at end of file
diff --git a/server/schema/chromosome.js b/server/schema/chromosome.js
index 33bce7cf511f0ae5fee1661c955bd3de6b831e5a..8f2c657525970b900ece8a3481def3a619b1e4a7 100644
--- a/server/schema/chromosome.js
+++ b/server/schema/chromosome.js
@@ -14,6 +14,9 @@ type Chromosome implements Sequence @node(labels: ["Sequence", "Chromosome"]) {
"ALternative chromosome names"
altnames: [String!]
+ "Fasta id if any"
+ fasta_id: String
+
"""The chromosome description (i.e. the comment part in fasta file)"""
description: String
@@ -49,5 +52,8 @@ type Chromosome implements Sequence @node(labels: ["Sequence", "Chromosome"]) {
"The type of GraphQL object"
graphql_type: GraphQLType!
+
+ "Tracks the sequence is part of"
+ tracks: [Track!]! @relationship(type: "HAS_REFERENCE", direction: IN)
}
`
\ No newline at end of file
diff --git a/server/schema/generic_sequence.js b/server/schema/generic_sequence.js
index 44d02e230b42f5e9d0fffd0ecd23baa3dfdd3cb3..04dd02a028f8b9a8ac5039fe6540652a39771afa 100644
--- a/server/schema/generic_sequence.js
+++ b/server/schema/generic_sequence.js
@@ -16,6 +16,9 @@ type GenericSequence implements Sequence @node(labels: ["Sequence", "GenericSequ
"""The sequence description (i.e. the comment part in fasta file)"""
description: String
+
+ "Fasta id if any"
+ fasta_id: String
"""The type of the sequence (DNA or RNA)"""
type: SequenceType!
@@ -52,5 +55,8 @@ type GenericSequence implements Sequence @node(labels: ["Sequence", "GenericSequ
"The parent sequence if any"
parent: Sequence @relationship(type: "HAS_FEATURE", direction: IN, properties: "HasFeature")
+
+ "Tracks the sequence is part of"
+ tracks: [Track!]! @relationship(type: "HAS_REFERENCE", direction: IN)
}
`
diff --git a/server/schema/guide.js b/server/schema/guide.js
index 13da0f61f64b903980ba9d31848da797852de221..db556c23159f9d79f6e2214dad9324edc35d9925 100644
--- a/server/schema/guide.js
+++ b/server/schema/guide.js
@@ -13,6 +13,9 @@ type Guide implements Sequence @node(labels: ["Sequence", "Guide"]) {
"Alternative guide names"
altnames: [String!]
+
+ "Fasta id if any"
+ fasta_id: String
"Guide description"
description: String
@@ -58,7 +61,7 @@ type Guide implements Sequence @node(labels: ["Sequence", "Guide"]) {
"The type of GraphQL object"
graphql_type: GraphQLType!
-
+
"""The modifications guided by the guide"""
modifications: [Modification!]! @relationship(type: "GUIDE", direction: OUT)
@@ -76,6 +79,9 @@ type Guide implements Sequence @node(labels: ["Sequence", "Guide"]) {
"Table entries associated to the guide"
entries: [TableEntry!]! @relationship(type: "IS_PART_OF", direction: OUT, aggregate: false) @selectable(onRead: true, onAggregate: false)
+
+ "Tracks the sequence is part of"
+ tracks: [Track!]! @relationship(type: "HAS_REFERENCE", direction: IN)
}
"""
@@ -91,6 +97,9 @@ enum GuideClass {
"ScaRNA"
ScaRNA
+ "Protein"
+ PROT
+
"Other"
Other
}
diff --git a/server/schema/modification.js b/server/schema/modification.js
index d238370fc7f94fac3a6ac35e94369eb61e445f97..0ebe67ec02a204df028a25f630accac04a722b18 100644
--- a/server/schema/modification.js
+++ b/server/schema/modification.js
@@ -39,11 +39,15 @@ type Modification {
"Short label of modification type formatted with markdown syntax"
type_short_label: String
- "Interactions that cause the modification"
+ "Interactions that position the modification"
interactions: [Interaction!]! @relationship(type: "CAUSE", direction: IN)
"Table entries associated to the modification"
entries: [TableEntry!]! @relationship(type: "IS_PART_OF", direction: OUT, aggregate: false) @selectable(onRead: true, onAggregate: false)
+
+ "Aligned Modification Group"
+ align_groups: [AlignedModifications!]! @relationship(type: "IS_PART_OF", direction: OUT)
+
}
"""
diff --git a/server/schema/modification_mapping.js b/server/schema/modification_mapping.js
new file mode 100644
index 0000000000000000000000000000000000000000..955fb2621314790fcc20c237d03479f99e26dbd4
--- /dev/null
+++ b/server/schema/modification_mapping.js
@@ -0,0 +1,10 @@
+import { gql } from 'graphql-tag'
+
+export const typeDefs = gql`
+type ModificationMapping @relationshipProperties {
+
+ "The position corrected for the alignement"
+ position: Int!
+
+}
+`
diff --git a/server/schema/sequence.js b/server/schema/sequence.js
index 6573a075760b36f3081533d9ff0b04510aadeedf..4072da280518a58875f1ed6f85f79b6b06d85844 100644
--- a/server/schema/sequence.js
+++ b/server/schema/sequence.js
@@ -14,6 +14,9 @@ interface Sequence {
"ALternative sequence names"
altnames: [String!]
+ "Fasta id if any"
+ fasta_id: String
+
"""The sequence description (i.e. the comment part in fasta file)"""
description: String
@@ -44,12 +47,12 @@ interface Sequence {
"The reference genome the sequence comes from"
genome: Genome @declareRelationship
- #"The other genome in which the sequence exists"
- #genomes: [Genome!] @declareRelationship
-
"The features associated with the sequence"
features: [Sequence!]! @declareRelationship
+ "Tracks the sequence is part of"
+ tracks: [Track!]! @declareRelationship
+
"The type of GraphQL object"
graphql_type: GraphQLType!
}
diff --git a/server/schema/target.js b/server/schema/target.js
index 65a84700fa7841ec4f932beff7f3fadd032ee4f3..0e8d0f1d350d21fe41f84e1e41e4bdd9cd414166 100644
--- a/server/schema/target.js
+++ b/server/schema/target.js
@@ -13,6 +13,9 @@ type Target implements Sequence @node(labels: ["Sequence", "Target"]) {
"ALternative guide names"
altnames: [String!]
+
+ "Fasta id if any"
+ fasta_id: String
"Family (e.g. 16S, 18S, U2, ...)"
family: String
@@ -62,6 +65,9 @@ type Target implements Sequence @node(labels: ["Sequence", "Target"]) {
"The type of GraphQL object"
graphql_type: GraphQLType!
+ "True if current sequence is a reference sequence"
+ is_ref: Boolean!
+
"The target is a feature from parent"
parent: Sequence @relationship(type: "HAS_FEATURE", direction: IN, properties: "HasFeature")
@@ -74,5 +80,7 @@ type Target implements Sequence @node(labels: ["Sequence", "Target"]) {
"Table entries associated to the guide"
entries: [TableEntry!]! @relationship(type: "IS_PART_OF", direction: OUT, aggregate: false) @selectable(onRead: true, onAggregate: false)
+ "Tracks the sequence is part of"
+ tracks: [Track!]! @relationship(type: "HAS_REFERENCE", direction: IN)
}
`
\ No newline at end of file
diff --git a/server/schema/track.js b/server/schema/track.js
new file mode 100644
index 0000000000000000000000000000000000000000..ffd95c38d34e935bf8fbfc5f7078456a5e53adb3
--- /dev/null
+++ b/server/schema/track.js
@@ -0,0 +1,85 @@
+import { gql } from 'graphql-tag'
+
+export const typeDefs = gql`
+
+interface Track {
+ "The track ID"
+ id: ID!
+
+ "The track name"
+ name: String
+
+ "The track short name"
+ shortname: String
+
+ "The sequence"
+ content: String !
+
+ "The sequence the track is associated to"
+ ref: Sequence! @declareRelationship
+
+ "The alignment the track is part of"
+ alignment: Alignment @declareRelationship
+
+ "Other tracks associated/coupled/grouped with the current track"
+ links: [Track!]!
+}
+
+
+"""
+Tracks encoding the RNA sequence adjusted to alignment by including some aditional '-' and correcting the modification position
+"""
+type SequenceTrack implements Track {
+
+ "The track ID"
+ id: ID!
+
+ "The track name"
+ name: String
+
+ "The track short name"
+ shortname: String
+
+ "The sequence"
+ content: String !
+
+ "The sequence the track is associated to"
+ ref: Sequence! @relationship(type: "HAS_REFERENCE", direction: OUT)
+
+ "The alignment the track is part of"
+ alignment: Alignment @relationship(type: "ALIGN_WITH", direction: OUT)
+
+ "Other tracks associated/coupled/grouped with the current track"
+ links: [Track!]!
+
+ "The modifications which position are adjusted to current Alignement"
+ aligned_modifications: [Modification!]! @relationship(type: "HAS_ALIGNED_MODIFICATION", direction: OUT, properties: "ModificationMapping")
+}
+
+"""
+Tracks encoding the structure of the RNA sequence with parenthesis and dots chars
+"""
+type StructureTrack implements Track {
+
+ "The track ID"
+ id: ID!
+
+ "The track name"
+ name: String
+
+ "The track short name"
+ shortname: String
+
+ "The sequence"
+ content: String !
+
+ "The sequence the track is associated to"
+ ref: Sequence! @relationship(type: "HAS_REFERENCE", direction: OUT)
+
+ "The alignment the track is part of"
+ alignment: Alignment @relationship(type: "ALIGN_WITH", direction: OUT)
+
+ "Other tracks associated with the current track"
+ links: [Track!]!
+}
+`