Skip to content
Snippets Groups Projects
Commit 02dcafae authored by Alexis Mergez's avatar Alexis Mergez
Browse files

Update Snakefile

parent 2e8e05af
No related branches found
No related tags found
1 merge request!18v1.12a
Pipeline #217139 canceled
......@@ -280,6 +280,8 @@ rule SyRI_on_chrInput:
## Creating single fasta from multifasta
zcat {input.fasta} | awk -F"#" \
'/^>/ {{OUT="{output.wrkdir}" substr($0,2) ".fa"}}; {{print >> OUT; close(OUT)}}'
grep '>' {output.wrkdir}/*.fa
## Getting the list of sequences
asmList=()
......
0% Loading or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment