Merge branch 'dev' into 'main' (4c93ac53) · Commits · Alexis Mergez / Pan1c · GitLab

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4c93ac53

Commit 4c93ac53 authored 8 months ago by Alexis Mergez

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Merge branch 'dev' into 'main'

v1.12a

See merge request !18

parents fb3a8acf 249b23d0

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Tags v1.12a

1 merge request!18v1.12a

Pipeline #219211 passed 8 months ago

Changes 15
Pipelines 3

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.gitlab-ci.yml 1 addition, 1 deletion

.gitlab-ci.yml
README.md 2 additions, 1 deletion

README.md
Snakefile 311 additions, 180 deletions

Snakefile
config.yaml 7 additions, 5 deletions

config.yaml
data/.gitkeep 0 additions, 0 deletions

data/.gitkeep
example/config_CICD.yaml 4 additions, 1 deletion

example/config_CICD.yaml
rules/tools.smk 31 additions, 0 deletions

rules/tools.smk
scripts/chrInputStats.py 3 additions, 0 deletions

scripts/chrInputStats.py
scripts/chrStatsAggregation.py 2 additions, 0 deletions

scripts/chrStatsAggregation.py
scripts/contig_position.R 39 additions, 8 deletions

scripts/contig_position.R
scripts/coreStats.py 5 additions, 0 deletions

scripts/coreStats.py
scripts/getPanacusHG.sh 1 addition, 1 deletion

scripts/getPanacusHG.sh
scripts/getSyriFigs.sh 33 additions, 8 deletions

scripts/getSyriFigs.sh
scripts/ragtagChromInfer.sh 3 additions, 3 deletions

scripts/ragtagChromInfer.sh
scripts/syri_pruning.py 2 additions, 0 deletions

scripts/syri_pruning.py

with 444 additions and 208 deletions

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