Added logs to more steps :
- Panacus
- Squeeze
- SyRI
- Quast
- RagTag

Added threads to stats jobs

Added addition of SyRI figs in the final report if wanted

- Removed SyrI rule to get an All assembly figure ( will be replaced with a run of SyRI on chromosomes only instead of all assemblies)
- Renamed some rules for clarity
- Adding more elements to the final report

Offloading chromosome FASTA compression from clustering rule

This reverts commit 8b78a026.